An innovative protein expression system using RNA polymerase I for large-scale screening of high-nucleic-acid content Saccharomyces cerevisiae strains

Saccharomyces cerevisiae is the preferred source of RNA derivatives, which are widely used as supplements for foods and pharmaceuticals. As the most abundant RNAs, the ribosomal RNAs (rRNAs) transcribed by RNA polymerase I (Pol I) have no 5′ caps, thus cannot be translated to proteins. To screen high-nucleic-acid content yeasts more efficiently, a cap-independent protein expression system mediated by Pol I has been designed and established to monitor the regulatory changes of rRNA synthesis by observing the variation in the reporter genes expression. The elements including Pol I-recognized rDNA promoter, the internal ribosome entry site from cricket paralytic virus which can recruit ribosomes internally, reporter genes (URA3 and yEGFP3), oligo-dT and an rDNA terminator were ligated to a yeast episomal plasmid. This system based on the URA3 gene worked well by observing the growth phenotype and did not require the disruption of cap-dependent initiation factors. The fluorescence intensity of strains expressing the yEGFP3 gene increased and drifted after mutagenesis. Combined with flow cytometry, cells with higher GFP level were sorted out. A strain showed 58% improvement in RNA content and exhibited no sequence alteration in the whole expression cassette introduced. This study provides a novel strategy for breeding high-nucleic-acid content yeasts.     

兴隆山国家级自然保护区不同生境的蝴蝶群落结构与种-多度分布

为明确甘肃兴隆山国家级自然保护区内的蝴蝶种类, 以及不同生境的蝴蝶群落结构与种-多度分布的变化情况, 在全部5个林场选取6条样线, 于2015-2018年连续4年采用样线法对保护区的蝴蝶进行调查和采集, 并分析了其多样性指数及种-多度分布。4年共采集蝴蝶标本5,719号, 经鉴定隶属8科69属120种。眼蝶科(3,093号)是保护区的优势类群, 喙蝶科仅采集到1号标本(朴喙蝶, Libythea lepita), 为保护区的稀有种类。其中, 各样线的种数、个体数、多样性指数以及物种丰富度表现为: 样线I最高, 样线IV次之, 说明其生境结构稳定, 环境良好, 适合蝶类生存; 样线III蜜源植物丰富, 各项指数较高; 样线V海拔较高, 各项指数较低; 样线II植物群落结构单一, 各项指数最低。相似性系数分析结果表明: 样线I和VI、III和IV、III和VI均为中等相似; 其余各样线间为中等不相似。区系分析结果表明: 古北种有63种, 占总种数的52.5%; 东洋种2种, 占总种数的1.7%; 广布种55种, 占总种数的45.8%。说明古北种占绝对优势, 且明显高于东洋种, 具有很强的地区代表性。种-多度分布分析结果表明: 样线I和IV呈现出对数正态分布, 模型拟合效果较好; 样线II和VI为非典型的对数级数模型, 符合生态位优先占领假说。说明不同生境以及人为干扰因素与蝶类多样性关系密切, 表现出单一生态系统蝴蝶群落的多样性指数较低, 复杂生态系统其多样性指数较高的特点。     

白毫早茶园3种害虫与其捕食性天敌的数量、时间和空间关系

为了合理利用和保护天敌进行卵形短须螨、双斑长跗萤叶甲和假眼小绿叶蝉的综合防治,用灰色系统分析方法和生态位分析法对合肥地区白毫早茶园3种主要害虫与其捕食性天敌在数量、时间、空间等方面关系进行分析,利用害虫与天敌关系密切指数之和综合评判9种天敌与3种害虫关系密切的前四位天敌。2015年卵形短须螨的前四位天敌是鳞纹肖蛸(5.3079)、三突花蟹蛛(5.1716)、锥腹肖蛸(4.8367)和草间小黑蛛(4.7869);2016年前四位天敌依次是三突花蟹蛛(5.3975)、鳞纹肖蛸(4.9414)、茶色新圆蛛(4.8757)、锥腹肖蛸(4.6815)。对两年结果综合分析,卵形短须螨的前四位天敌依次是三突花蟹蛛(10.5691)、鳞纹肖蛸(10.2493)、茶色新圆蛛(9.6353)和锥腹肖蛸(9.5182)。2015年双斑长跗萤叶甲的前四位天敌依次是锥腹肖蛸(5.6926)、异色瓢虫(5.6976)、八斑球腹蛛(5.5101)和斜纹猫蛛(5.4552);2016年依次是茶色新圆蛛(5.2909)、锥腹肖蛸(5.2710)、鳞纹肖蛸(5.1063)和斜纹猫蛛(5.0703)。对两年结果综合评判,双斑长跗萤叶甲的前四位天敌是锥腹肖蛸(10.9636)、茶色新圆蛛(10.6578)、异色瓢虫(10.7580)和鳞纹肖蛸(10.5437)。2015年假眼小绿叶蝉的前四位天敌依次是锥腹肖蛸(5.3614)、粽管巢蛛(5.2259)、斜纹猫蛛(5.1300)和茶色新圆蛛(4.7472);2016年是锥腹肖蛸(5.2666)、粽管巢蛛(5.2561)、草间小黑蛛(4.9376)和斜纹猫蛛(4.8335)。对两年结果综合评判,假眼小绿叶蝉的前四位天敌依次是锥腹肖蛸(10.6280)、粽管巢蛛(10.4820)、斜纹猫蛛(9.9635)和茶色新圆蛛(8.6137)。该研究结果为白毫早茶园3种害虫防治时合理保护和利用自然界的天敌的种类提供了科学依据。     

Intraspecific Diversity and Taxonomy of Emmonsia crescens

Mycopathologia - Emmonsia crescens is known as an environmental pathogen causing adiaspiromycosis in small rodents. As the generic name Emmonsia is no longer available for this species, its...     

Amelioration of Cd-Induced Oxidative Stress,MT Gene Expression,and Immune Damage by Vitamin C in Grass Carp Kidney Cells

Biological Trace Element Research - Cadmium (Cd) is the most common heavy metal and is easily detected in aquatic environments on a global scale. Vitamin C was a widely used vitamin in aquaculture....     

TRIM59 predicts poor prognosis and promotes pancreatic cancer progression via the PI3K/AKT/mTOR-glycolysis signaling axis

Aberrant expression of the tripartite motif containing 59 (TRIM59) has been reported to participate in the development and progression of various human cancers. However, its expression pattern and cellular roles in pancreatic cancer (PC) remains unclear. In our study, we found that TRIM59 expression was significantly increased in PC tissues and was positively correlated with several malignant behaviors and poor overall survival of PC patients based on bioinformatics analysis and immunohistochemistry staining. Functionally, small interfering RNA–mediated TRIM59 depletion inhibited cell proliferation and migration in vitro, while TRIM59 overexpression promoted cell proliferation and migration in vitro and drove tumor growth and liver metastasis in vivo. Mechanically, TRIM59 was found to enhance glycolysis through activating the PI3K/AKT/mTOR pathway, ultimately contributing to PC progression. Taken together, our results demonstrate that TRIM59 may be a potential predictor for PC and promotes PC progression via the PI3K/AKT/mTOR-glycolysis signaling pathway, which establishes the rationale for targeting the TRIM59-related pathways to treat PC.     

Review of forest landscape models: Types, methods, development and applications

Forest landscape models simulate forest change through time using spatially referenced data across a broad spatial scale (i.e. landscape scale) generally larger than a single forest stand. Spatial interactions between forest stands are a key component of such models. These models can incorporate other spatio-temporal processes such as natural disturbances (e.g. wildfires, hurricanes, outbreaks of native and exotic invasive pests and diseases) and human influences (e.g. harvesting and commercial thinning, planting, fire suppression). The models are increasingly used as tools for studying forest management, ecological assessment, restoration planning, and climate change. In this paper, we define forest landscape models and discuss development, components, and types of the models. We also review commonly used methods and approaches of modeling forest landscapes, their application, and their strengths and weaknesses. New developments in computer sciences, geographic information systems (GIS), remote sensing technologies, decision-support systems, and geo-spatial statistics have provided opportunities for developing a new generation of forest landscape models that are increasingly valuable for ecological research, restoration planning and resource management.     

Structure and Novel Functional Mechanism of Drosophila SNF in Sex-Lethal Splicing

Sans-fille (SNF) is the Drosophila homologue of mammalian general splicing factors U1A and U2B″, and it is essential in Drosophila sex determination. We found that, besides its ability to bind U1 snRNA, SNF can also bind polyuridine RNA tracts flanking the male-specific exon of the master switch gene Sex-lethal (Sxl) pre-mRNA specifically, similar to Sex-lethal protein (SXL). The polyuridine RNA binding enables SNF directly inhibit Sxl exon 3 splicing, as the dominant negative mutant SNF¹⁶²¹ binds U1 snRNA but not polyuridine RNA. Unlike U1A, both RNA recognition motifs (RRMs) of SNF can recognize polyuridine RNA tracts independently, even though SNF and U1A share very high sequence identity and overall structure similarity. As SNF RRM1 tends to self-associate on the opposite side of the RNA binding surface, it is possible for SNF to bridge the formation of super-complexes between two introns flanking Sxl exon 3 or between a intron and U1 snRNP, which serves the molecular basis for SNF to directly regulate Sxl splicing. Taken together, a new functional model for SNF in Drosophila sex determination is proposed. The key of the new model is that SXL and SNF function similarly in promoting Sxl male-specific exon skipping with SNF being an auxiliary or backup to SXL, and it is the combined dose of SXL and SNF governs Drosophila sex determination.